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CanVAS Shannon · Founder
Genome medallion
About this medallion

This medallion is built from this dog's genome. The outer ring is its breed composition, a corrected ancestry decomposition, colored to match its star in the atlas. The inner gauges are the traits we predict. If an owner claims the page, their real photo can take its place.

PFZ36B03_PFZ36B03

PFZ36B03_PFZ36B03 is a Golden Retriever from the Shannon research cohort. One of 18,477 dogs in the atlas.

See PFZ36B03_PFZ36B03 in the atlas
About PFZ36B03_PFZ36B03

PFZ36B03_PFZ36B03 sits at the edge of the Golden Retriever cluster but still well within it.

  • Predicted large by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Wire-coat furnishings - the eyebrow + beard variant at RSPO2.
PFZ36B03_PFZ36B03's nearest neighbors

The five dogs in the atlas whose genetic profiles sit closest to PFZ36B03_PFZ36B03's. Click any of them to keep exploring.

  1. GRLS_grlsTZYEA7YY 24.13
  2. GRLS_grlsFFKE0M33 24.18
  3. Oldies_grlsc3599cea 27.43
  4. PFZ7E03_PFZ7E03 28.10
  5. Oldies_grls18d6f618 30.78
PFZ36B03_PFZ36B03's breed

PFZ36B03_PFZ36B03 sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation.

  1. Golden Retriever 74%
  2. Labrador Retriever 26%
Source

From the CanVAS (Shannon cohort) . Breed-page reference: Golden Retriever.

Genotype at the 15 morphology loci

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/A
HMGA2 T/T
SMAD2 G/G
LCORL G/G
STC2 A/A
ADAMTS17 G/G
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 T/T
FGF5 T/C
KRT71 C/C
MC1R T/T
Ear set
MSRB3 A/A
Skull shape
BMP3 C/T
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 6.458
y 10.725
z 7.402
PCA-256 distance from breed centroid
39.41
Outlier percentile in breed
74
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which PFZ36B03_PFZ36B03 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC152 z = 4.47
  • chr25:28,621,324 loading 0.0364
  • chr20:11,911,649 loading 0.0323
  • chr20:7,517,267 loading -0.0311
PC205 z = -4.25
  • chr28:15,673,727 loading 0.0386
  • chr7:26,386,959 loading -0.0358
  • chr7:26,293,949 loading -0.0338
PC227 z = -3.57
  • chr27:43,803,988 loading 0.0373
  • chr12:19,514,576 loading 0.0344
  • chr20:11,758,428 loading -0.0328
Ancestry reconstruction error: 0.66