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CanVAS Hayward2016 · Founder
Genome medallion
About this medallion

This medallion is built from this dog's genome. The outer ring is its breed composition, a corrected ancestry decomposition, colored to match its star in the atlas. The inner gauges are the traits we predict. If an owner claims the page, their real photo can take its place.

PFZ36D11_PFZ36D11

PFZ36D11_PFZ36D11 is a Golden Retriever from the Hayward2016 research cohort. One of 18,477 dogs in the atlas.

See PFZ36D11_PFZ36D11 in the atlas
About PFZ36D11_PFZ36D11

PFZ36D11_PFZ36D11 sits near the center of the Golden Retriever cluster - genetically very typical for the breed.

  • Predicted giant by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Carrier of the RSPO2 wire-coat variant (single copy).
PFZ36D11_PFZ36D11's nearest neighbors

The five dogs in the atlas whose genetic profiles sit closest to PFZ36D11_PFZ36D11's. Click any of them to keep exploring.

  1. GRLS_grlsEBWSTBVV 27.25
  2. GRLS_grls1VG5ZO00 27.48
  3. PFZ4E01_PFZ4E01 29.29
  4. GRLS_grls4E3UX6YY 29.45
  5. Oldies_grlsd989ac83 29.51
PFZ36D11_PFZ36D11's breed

PFZ36D11_PFZ36D11 sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation.

  1. Golden Retriever 81%
  2. Labrador Retriever 19%
Source

From the CanVAS (Hayward2016 cohort) . Breed-page reference: Golden Retriever.

Genotype at the 15 morphology loci

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/C
HMGA2 T/T
SMAD2 G/G
LCORL G/G
STC2 A/A
ADAMTS17 G/A
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 C/T
FGF5 T/C
KRT71 C/C
MC1R T/T
Ear set
MSRB3 A/A
Skull shape
BMP3 C/T
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 7.526
y 11.150
z 7.961
PCA-256 distance from breed centroid
26.33
Outlier percentile in breed
6
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which PFZ36D11_PFZ36D11 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC214 z = -3.90
  • chr22:26,809,841 loading 0.0329
  • chr13:7,517,248 loading -0.0323
  • chr26:11,829,785 loading 0.0322
PC243 z = -2.81
  • chr28:2,607,542 loading 0.0337
  • chr6:55,527,821 loading 0.0334
  • chr28:36,111,093 loading -0.0311
PC228 z = 2.23
  • chr25:25,192,682 loading 0.0383
  • chr24:37,936,747 loading 0.0329
  • chr25:20,642,955 loading -0.0315
Ancestry reconstruction error: 0.51