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CanVAS Hayward2016 · Founder
Genome medallion
About this medallion

This medallion is built from this dog's genome. The outer ring is its breed composition, a corrected ancestry decomposition, colored to match its star in the atlas. The inner gauges are the traits we predict. If an owner claims the page, their real photo can take its place.

PFZ38D09_PFZ38D09

PFZ38D09_PFZ38D09 is a Golden Retriever from the Hayward2016 research cohort. One of 18,477 dogs in the atlas.

See PFZ38D09_PFZ38D09 in the atlas
About PFZ38D09_PFZ38D09

PFZ38D09_PFZ38D09 sits well inside the Golden Retriever cluster - a fairly typical example.

  • Predicted small by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Carrier of the RSPO2 wire-coat variant (single copy).
PFZ38D09_PFZ38D09's nearest neighbors

The five dogs in the atlas whose genetic profiles sit closest to PFZ38D09_PFZ38D09's. Click any of them to keep exploring.

  1. PFZ27F10_PFZ27F10 29.02
  2. PFZ4E01_PFZ4E01 29.80
  3. Oldies_grls6210403b 31.56
  4. GRLS_grls494T1OXX 31.90
  5. GRLS_grlsBMZY1XAA 32.05
PFZ38D09_PFZ38D09's breed

PFZ38D09_PFZ38D09 sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation.

  1. Golden Retriever 78%
  2. Labrador Retriever 22%
Source

From the CanVAS (Hayward2016 cohort) . Breed-page reference: Golden Retriever.

Genotype at the 15 morphology loci

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 A/A
HMGA2 C/C
SMAD2 G/G
LCORL G/G
STC2 A/A
ADAMTS17 G/A
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 C/T
FGF5 C/C
KRT71 C/C
MC1R T/C
Ear set
MSRB3 A/A
Skull shape
BMP3 C/C
SMOC2 A/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 7.418
y 11.386
z 8.359
PCA-256 distance from breed centroid
33.24
Outlier percentile in breed
43
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which PFZ38D09_PFZ38D09 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC43 z = -4.35
  • chr28:11,007,373 loading 0.0365
  • chr28:5,497,677 loading 0.0343
  • chr7:43,226,466 loading 0.0325
PC208 z = -3.13
  • chr17:4,173,842 loading 0.0377
  • chr17:4,128,965 loading 0.0376
  • chr17:4,233,511 loading 0.0366
PC53 z = -2.55
  • chr1:72,254,803 loading 0.0346
  • chr1:70,825,780 loading 0.0344
  • chr14:9,177,180 loading 0.0335
Ancestry reconstruction error: 0.62