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CanVAS Shannon · Founder
Genome medallion
About this medallion

This medallion is built from this dog's genome. The outer ring is its breed composition, a corrected ancestry decomposition, colored to match its star in the atlas. The inner gauges are the traits we predict. If an owner claims the page, their real photo can take its place.

PFZ41G11_PFZ41G11

PFZ41G11_PFZ41G11 is a Golden Retriever from the Shannon research cohort. One of 18,477 dogs in the atlas.

See PFZ41G11_PFZ41G11 in the atlas
About PFZ41G11_PFZ41G11

PFZ41G11_PFZ41G11 sits well inside the Golden Retriever cluster - a fairly typical example.

  • Predicted medium by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Carrier of the RSPO2 wire-coat variant (single copy).
PFZ41G11_PFZ41G11's nearest neighbors

The five dogs in the atlas whose genetic profiles sit closest to PFZ41G11_PFZ41G11's. Click any of them to keep exploring.

  1. Oldies_grls1b975853 28.87
  2. GRLS_grls4SP304TT 29.72
  3. Oldies_grls9e8e4210 30.41
  4. GRLS_grlsPQM65O88 30.72
  5. GRLS_grlsHE03MPRR 30.95
PFZ41G11_PFZ41G11's breed

PFZ41G11_PFZ41G11 sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation.

  1. Golden Retriever 80%
  2. Labrador Retriever 20%
Source

From the CanVAS (Shannon cohort) . Breed-page reference: Golden Retriever.

Genotype at the 15 morphology loci

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 A/A
HMGA2 T/T
SMAD2 G/G
LCORL G/G
STC2 A/A
ADAMTS17 G/G
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 C/T
FGF5 C/C
KRT71 C/C
MC1R T/T
Ear set
MSRB3 A/A
Skull shape
BMP3 C/T
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 5.889
y 10.472
z 7.208
PCA-256 distance from breed centroid
34.34
Outlier percentile in breed
49
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which PFZ41G11_PFZ41G11 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC113 z = 3.47
  • chr22:17,237,143 loading 0.0474
  • chr22:17,327,096 loading 0.0458
  • chr1:53,531,199 loading 0.0436
PC126 z = -3.36
  • chr21:31,645,739 loading 0.0387
  • chr21:34,014,573 loading -0.0385
  • chr26:6,573,837 loading 0.0382
PC116 z = -3.35
  • chr21:8,227,069 loading 0.0376
  • chr16:47,900,123 loading 0.0333
  • chr1:24,270,460 loading 0.0312
Ancestry reconstruction error: 0.60