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CanVAS Hayward2016 · Founder
Genome medallion
About this medallion

This medallion is built from this dog's genome. The outer ring is its breed composition, a corrected ancestry decomposition, colored to match its star in the atlas. The inner gauges are the traits we predict. If an owner claims the page, their real photo can take its place.

PFZ42B05_PFZ42B05

PFZ42B05_PFZ42B05 is a Golden Retriever from the Hayward2016 research cohort. One of 18,477 dogs in the atlas.

See PFZ42B05_PFZ42B05 in the atlas
About PFZ42B05_PFZ42B05

PFZ42B05_PFZ42B05 sits near the center of the Golden Retriever cluster - genetically very typical for the breed.

  • Predicted medium by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Smooth coat. No wire-furnishings variant at RSPO2.
PFZ42B05_PFZ42B05's nearest neighbors

The five dogs in the atlas whose genetic profiles sit closest to PFZ42B05_PFZ42B05's. Click any of them to keep exploring.

  1. GRLS_grlsCTEORNN 29.34
  2. Oldies_grlsd989ac83 29.40
  3. GRLS_grlsI7NM0MNN 29.46
  4. PFZ23C02_PFZ23C02 30.03
  5. GRLS_grls81EERCKK 30.38
PFZ42B05_PFZ42B05's breed

PFZ42B05_PFZ42B05 sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation.

  1. Golden Retriever 83%
  2. Labrador Retriever 17%
Source

From the CanVAS (Hayward2016 cohort) . Breed-page reference: Golden Retriever.

Genotype at the 15 morphology loci

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/A
HMGA2 T/T
SMAD2 A/G
LCORL G/G
STC2 A/A
ADAMTS17 G/G
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 C/C
FGF5 T/C
KRT71 C/C
MC1R T/T
Ear set
MSRB3 A/A
Skull shape
BMP3 T/T
SMOC2 A/A
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 7.327
y 10.902
z 8.012
PCA-256 distance from breed centroid
28.18
Outlier percentile in breed
15
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which PFZ42B05_PFZ42B05 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC251 z = 3.09
  • chr25:40,121,397 loading 0.0326
  • chr28:17,013,099 loading 0.0310
  • chr26:15,170,564 loading 0.0302
PC244 z = 2.54
  • chr9:27,289,940 loading 0.0354
  • chr25:21,796,415 loading 0.0335
  • chr20:38,277,512 loading -0.0333
PC148 z = 2.35
  • chr6:30,769,727 loading 0.0436
  • chr1:62,992,483 loading -0.0356
  • chr6:30,876,588 loading -0.0355
Ancestry reconstruction error: 0.57