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CanVAS Shannon · Founder
Genome medallion
About this medallion

This medallion is built from this dog's genome. The outer ring is its breed composition, a corrected ancestry decomposition, colored to match its star in the atlas. The inner gauges are the traits we predict. If an owner claims the page, their real photo can take its place.

PFZ43A06_PFZ43A06

PFZ43A06_PFZ43A06 is a Golden Retriever from the Shannon research cohort. One of 18,477 dogs in the atlas.

See PFZ43A06_PFZ43A06 in the atlas
About PFZ43A06_PFZ43A06

PFZ43A06_PFZ43A06 is a notable Golden Retriever - distinctive within the breed.

  • Predicted large by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Carrier of the RSPO2 wire-coat variant (single copy).
PFZ43A06_PFZ43A06's nearest neighbors

The five dogs in the atlas whose genetic profiles sit closest to PFZ43A06_PFZ43A06's. Click any of them to keep exploring.

  1. PFZ44G05_PFZ44G05 20.32
  2. PFZ29G04_PFZ29G04 30.52
  3. PFZ23A03_PFZ23A03 30.60
  4. 10931_10931 31.25
  5. Oldies_grls95c36f29 34.89
PFZ43A06_PFZ43A06's breed

PFZ43A06_PFZ43A06 sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation.

  1. Golden Retriever 78%
  2. Labrador Retriever 23%
Source

From the CanVAS (Shannon cohort) . Breed-page reference: Golden Retriever.

Genotype at the 15 morphology loci

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 A/A
HMGA2 C/T
SMAD2 G/G
LCORL G/G
STC2 A/A
ADAMTS17 A/A
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 C/T
FGF5 T/C
KRT71 C/C
MC1R T/T
Ear set
MSRB3 A/A
Skull shape
BMP3 C/T
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 9.400
y 8.998
z 8.702
PCA-256 distance from breed centroid
40.48
Outlier percentile in breed
78
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which PFZ43A06_PFZ43A06 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC121 z = -3.17
  • chr1:99,506,167 loading 0.0408
  • chr15:22,270,589 loading -0.0399
  • chr15:22,844,988 loading -0.0387
PC66 z = 3.05
  • chr22:1,996,400 loading 0.0426
  • chr22:1,969,643 loading -0.0423
  • chr22:2,473,315 loading 0.0395
PC212 z = 2.98
  • chr28:326,614 loading 0.0378
  • chr2:50,919,591 loading 0.0372
  • chr28:1,791,942 loading -0.0335
Ancestry reconstruction error: 0.61