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CanVAS Hayward2016 · Founder
Genome medallion
About this medallion

This medallion is built from this dog's genome. The outer ring is its breed composition, a corrected ancestry decomposition, colored to match its star in the atlas. The inner gauges are the traits we predict. If an owner claims the page, their real photo can take its place.

PFZ43H09_PFZ43H09

PFZ43H09_PFZ43H09 is a Golden Retriever from the Hayward2016 research cohort. One of 18,477 dogs in the atlas.

See PFZ43H09_PFZ43H09 in the atlas
About PFZ43H09_PFZ43H09

PFZ43H09_PFZ43H09 sits at the edge of the Golden Retriever cluster but still well within it.

  • Predicted giant by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Smooth coat. No wire-furnishings variant at RSPO2.
PFZ43H09_PFZ43H09's nearest neighbors

The five dogs in the atlas whose genetic profiles sit closest to PFZ43H09_PFZ43H09's. Click any of them to keep exploring.

  1. PFZ8H09_PFZ8H09 26.57
  2. GRLS_grlsXZJJ94DD 33.73
  3. PILOT_grlsNDQY5Y55 33.96
  4. GRLS_grlsSHPP50YY 34.51
  5. GRLS_grls3L8K8I00 34.73
PFZ43H09_PFZ43H09's breed

PFZ43H09_PFZ43H09 sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation.

  1. Golden Retriever 79%
  2. Labrador Retriever 21%
Source

From the CanVAS (Hayward2016 cohort) . Breed-page reference: Golden Retriever.

Genotype at the 15 morphology loci

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/C
HMGA2 T/T
SMAD2 G/G
LCORL G/G
STC2 A/A
ADAMTS17 G/A
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 C/C
FGF5 T/C
KRT71 C/C
MC1R T/C
Ear set
MSRB3 A/A
Skull shape
BMP3 C/T
SMOC2 A/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 9.166
y 9.396
z 8.398
PCA-256 distance from breed centroid
35.20
Outlier percentile in breed
54
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which PFZ43H09_PFZ43H09 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC99 z = -3.16
  • chr34:1,972,619 loading 0.0494
  • chr34:1,533,247 loading 0.0454
  • chr34:2,440,834 loading -0.0445
PC224 z = 2.62
  • chr1:60,626,811 loading 0.0345
  • chr1:60,550,367 loading 0.0321
  • chr7:17,102,947 loading 0.0300
PC116 z = 2.29
  • chr21:8,227,069 loading 0.0376
  • chr16:47,900,123 loading 0.0333
  • chr1:24,270,460 loading 0.0312
Ancestry reconstruction error: 0.55