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CanVAS Hayward2016 · Founder
Genome medallion
About this medallion

This medallion is built from this dog's genome. The outer ring is its breed composition, a corrected ancestry decomposition, colored to match its star in the atlas. The inner gauges are the traits we predict. If an owner claims the page, their real photo can take its place.

PFZ5F02_PFZ5F02

PFZ5F02_PFZ5F02 is a Golden Retriever from the Hayward2016 research cohort. One of 18,477 dogs in the atlas.

See PFZ5F02_PFZ5F02 in the atlas
About PFZ5F02_PFZ5F02

PFZ5F02_PFZ5F02 sits near the center of the Golden Retriever cluster - genetically very typical for the breed.

  • Predicted large by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Wire-coat furnishings - the eyebrow + beard variant at RSPO2.
PFZ5F02_PFZ5F02's nearest neighbors

The five dogs in the atlas whose genetic profiles sit closest to PFZ5F02_PFZ5F02's. Click any of them to keep exploring.

  1. PFZ26D01_PFZ26D01 29.75
  2. Oldies_grlsd2782c40 29.85
  3. GRLS_grlsDRI8OU00 30.23
  4. GRLS_grlsVWUHSQNN 30.48
  5. GRLS_grlsLFOHPMNN 30.54
PFZ5F02_PFZ5F02's breed

PFZ5F02_PFZ5F02 sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation.

  1. Golden Retriever 77%
  2. Labrador Retriever 23%
Source

From the CanVAS (Hayward2016 cohort) . Breed-page reference: Golden Retriever.

Genotype at the 15 morphology loci

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/C
HMGA2 T/T
SMAD2 G/G
LCORL G/G
STC2 A/A
ADAMTS17 G/G
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 T/T
FGF5 T/C
KRT71 C/C
MC1R T/C
Ear set
MSRB3 A/A
Skull shape
BMP3 T/T
SMOC2 A/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 7.299
y 11.260
z 8.027
PCA-256 distance from breed centroid
29.81
Outlier percentile in breed
25
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which PFZ5F02_PFZ5F02 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC43 z = -3.58
  • chr28:11,007,373 loading 0.0365
  • chr28:5,497,677 loading 0.0343
  • chr7:43,226,466 loading 0.0325
PC170 z = 2.98
  • chr28:5,428,661 loading 0.0343
  • chr2:48,019,031 loading -0.0318
  • chr2:8,786,956 loading 0.0314
PC230 z = 2.50
  • chr14:35,252,647 loading 0.0345
  • chr7:40,535,333 loading 0.0300
  • chr17:50,105,121 loading -0.0291
Ancestry reconstruction error: 0.57