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CanVAS Hayward2016 · Founder
Genome medallion
About this medallion

This medallion is built from this dog's genome. The outer ring is its breed composition, a corrected ancestry decomposition, colored to match its star in the atlas. The inner gauges are the traits we predict. If an owner claims the page, their real photo can take its place.

PFZ7C03_PFZ7C03

PFZ7C03_PFZ7C03 is a Golden Retriever from the Hayward2016 research cohort. One of 18,477 dogs in the atlas.

See PFZ7C03_PFZ7C03 in the atlas
About PFZ7C03_PFZ7C03

PFZ7C03_PFZ7C03 is a strong genetic outlier within the Golden Retriever cluster - among the most distinctive examples of their breed.

  • Predicted giant by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Wire-coat furnishings - the eyebrow + beard variant at RSPO2.
PFZ7C03_PFZ7C03's nearest neighbors

The five dogs in the atlas whose genetic profiles sit closest to PFZ7C03_PFZ7C03's. Click any of them to keep exploring.

  1. PFZ23A03_PFZ23A03 30.49
  2. PFZ7C04_PFZ7C04 32.97
  3. GRLS_grls92EJH7II 35.74
  4. PFZ7F06_PFZ7F06 36.23
  5. GRLS_grls87P8Z7OO 36.29
PFZ7C03_PFZ7C03's breed

PFZ7C03_PFZ7C03 sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation.

  1. Golden Retriever 82%
  2. Labrador Retriever 19%
Source

From the CanVAS (Hayward2016 cohort) . Breed-page reference: Golden Retriever.

Genotype at the 15 morphology loci

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/C
HMGA2 T/T
SMAD2 G/G
LCORL G/G
STC2 A/A
ADAMTS17 G/A
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 T/T
FGF5 C/C
KRT71 C/C
MC1R T/T
Ear set
MSRB3 A/A
Skull shape
BMP3 C/C
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 9.645
y 9.008
z 8.969
PCA-256 distance from breed centroid
50.85
Outlier percentile in breed
99
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which PFZ7C03_PFZ7C03 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC79 z = -4.16
  • chr3:7,389,779 loading 0.0444
  • chr3:6,720,531 loading -0.0378
  • chr3:6,392,552 loading -0.0378
PC87 z = -4.12
  • chr18:17,740,291 loading 0.0425
  • chr18:13,022,424 loading -0.0364
  • chr18:14,917,450 loading -0.0361
PC82 z = 4.10
  • chr1:68,097,128 loading 0.0396
  • chr1:69,785,342 loading -0.0385
  • chr1:70,040,058 loading 0.0383
Ancestry reconstruction error: 0.69