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CanVAS Hayward2016 · Founder
Genome medallion
About this medallion

This medallion is built from this dog's genome. The outer ring is its breed composition, a corrected ancestry decomposition, colored to match its star in the atlas. The inner gauges are the traits we predict. If an owner claims the page, their real photo can take its place.

PFZ8B06_PFZ8B06

PFZ8B06_PFZ8B06 is a Golden Retriever from the Hayward2016 research cohort. One of 18,477 dogs in the atlas.

See PFZ8B06_PFZ8B06 in the atlas
About PFZ8B06_PFZ8B06

PFZ8B06_PFZ8B06 sits at the edge of the Golden Retriever cluster but still well within it.

  • Predicted medium by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Wire-coat furnishings - the eyebrow + beard variant at RSPO2.
PFZ8B06_PFZ8B06's nearest neighbors

The five dogs in the atlas whose genetic profiles sit closest to PFZ8B06_PFZ8B06's. Click any of them to keep exploring.

  1. PFZ36H10_PFZ36H10 23.00
  2. GRLS_grlsTTQ7Y3TT 25.63
  3. PFZ41G08_PFZ41G08 26.62
  4. GRLS_grlsDI5F7E33 27.61
  5. Oldies_grls3990be68 30.49
PFZ8B06_PFZ8B06's breed

PFZ8B06_PFZ8B06 sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation.

  1. Golden Retriever 75%
  2. Labrador Retriever 26%
Source

From the CanVAS (Hayward2016 cohort) . Breed-page reference: Golden Retriever.

Genotype at the 15 morphology loci

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 A/A
HMGA2 T/T
SMAD2 G/G
LCORL G/G
STC2 A/A
ADAMTS17 G/G
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 T/T
FGF5 C/C
KRT71 C/C
MC1R C/C
Ear set
MSRB3 A/A
Skull shape
BMP3 C/T
SMOC2 A/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 8.492
y 10.565
z 5.842
PCA-256 distance from breed centroid
37.81
Outlier percentile in breed
67
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which PFZ8B06_PFZ8B06 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC234 z = -4.23
  • chr4:83,381,939 loading 0.0343
  • chr10:64,946,466 loading 0.0322
  • chr30:24,029,755 loading -0.0321
PC192 z = -3.14
  • chr25:28,817,053 loading 0.0428
  • chr25:4,418,784 loading 0.0393
  • chr25:26,660,651 loading 0.0386
PC126 z = 3.08
  • chr21:31,645,739 loading 0.0387
  • chr21:34,014,573 loading -0.0385
  • chr26:6,573,837 loading 0.0382
Ancestry reconstruction error: 0.63