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Genome medallion
About this medallion

This medallion is built from this dog's genome. The outer ring is its breed composition, a corrected ancestry decomposition, colored to match its star in the atlas. The inner gauges are the traits we predict. If an owner claims the page, their real photo can take its place.

PILOT_grls4JKVS2BB

PILOT_grls4JKVS2BB is a Golden Retriever from the GRLS research cohort. One of 18,477 dogs in the atlas.

See PILOT_grls4JKVS2BB in the atlas
About PILOT_grls4JKVS2BB

PILOT_grls4JKVS2BB sits near the center of the Golden Retriever cluster - genetically very typical for the breed.

  • Predicted large by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Wire-coat furnishings - the eyebrow + beard variant at RSPO2.
PILOT_grls4JKVS2BB's nearest neighbors

The five dogs in the atlas whose genetic profiles sit closest to PILOT_grls4JKVS2BB's. Click any of them to keep exploring.

  1. GRLS_grlsDX627P99 28.59
  2. GRLS_grlsTIRJKOII 29.03
  3. GRLS_grls0449M0EE 29.19
  4. GRLS_grls5SG3S9BB 29.45
  5. GRLS_grlsHXFOXYTT 29.46
PILOT_grls4JKVS2BB's breed

PILOT_grls4JKVS2BB sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation.

  1. Golden Retriever 76%
  2. Labrador Retriever 25%
Source

From the Golden Retriever Lifetime Study . Breed-page reference: Golden Retriever.

Genotype at the 15 morphology loci

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/C
HMGA2 C/T
SMAD2 G/G
LCORL G/G
STC2 A/A
ADAMTS17 G/A
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 T/T
FGF5 C/C
KRT71 C/C
MC1R T/C
Ear set
MSRB3 A/A
Skull shape
BMP3 C/C
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 7.065
y 11.557
z 7.986
PCA-256 distance from breed centroid
29.14
Outlier percentile in breed
21
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which PILOT_grls4JKVS2BB scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC211 z = -2.51
  • chr18:2,884,545 loading 0.0378
  • chr18:2,790,632 loading -0.0346
  • chr19:17,007,564 loading -0.0346
PC202 z = 2.48
  • chr7:2,141,056 loading 0.0366
  • chr14:36,686,192 loading -0.0363
  • chr14:12,756,008 loading -0.0320
PC43 z = -2.46
  • chr28:11,007,373 loading 0.0365
  • chr28:5,497,677 loading 0.0343
  • chr7:43,226,466 loading 0.0325
Ancestry reconstruction error: 0.58