Skip to main content
snıff
GRLS Hero · Founder
Genome medallion
About this medallion

This medallion is built from this dog's genome. The outer ring is its breed composition, a corrected ancestry decomposition, colored to match its star in the atlas. The inner gauges are the traits we predict. If an owner claims the page, their real photo can take its place.

PILOT_grlsJ1UUTL

PILOT_grlsJ1UUTL is a Golden Retriever from the GRLS research cohort. One of 18,477 dogs in the atlas.

See PILOT_grlsJ1UUTL in the atlas
About PILOT_grlsJ1UUTL

PILOT_grlsJ1UUTL sits at the edge of the Golden Retriever cluster but still well within it.

  • Predicted large by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Carrier of the RSPO2 wire-coat variant (single copy).
PILOT_grlsJ1UUTL's nearest neighbors

The five dogs in the atlas whose genetic profiles sit closest to PILOT_grlsJ1UUTL's. Click any of them to keep exploring.

  1. GRLS_grlsLGENKT99 23.70
  2. GRLS_grlsNG8DLWBB 25.69
  3. GRLS_grls0N6CMARR 29.48
  4. GRLS_grlsW2TLKFWW 31.13
  5. GRLS_grlsYID06966 31.68
PILOT_grlsJ1UUTL's breed

PILOT_grlsJ1UUTL sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation.

  1. Golden Retriever 82%
  2. Labrador Retriever 18%
Source

From the Golden Retriever Lifetime Study . Breed-page reference: Golden Retriever.

Genotype at the 15 morphology loci

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/A
HMGA2 C/T
SMAD2 G/G
LCORL G/G
STC2 A/A
ADAMTS17 G/A
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 C/T
FGF5 C/C
KRT71 C/C
MC1R T/T
Ear set
MSRB3 A/A
Skull shape
BMP3 C/T
SMOC2 A/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 8.170
y 10.303
z 7.054
PCA-256 distance from breed centroid
35.17
Outlier percentile in breed
53
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which PILOT_grlsJ1UUTL scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC126 z = 4.02
  • chr21:31,645,739 loading 0.0387
  • chr21:34,014,573 loading -0.0385
  • chr26:6,573,837 loading 0.0382
PC82 z = -2.62
  • chr1:68,097,128 loading 0.0396
  • chr1:69,785,342 loading -0.0385
  • chr1:70,040,058 loading 0.0383
PC142 z = 2.61
  • chr23:22,412,099 loading 0.0339
  • chr12:15,112,297 loading -0.0336
  • chr12:4,421,359 loading 0.0318
Ancestry reconstruction error: 0.62