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Genome medallion
About this medallion

This medallion is built from this dog's genome. The outer ring is its breed composition, a corrected ancestry decomposition, colored to match its star in the atlas. The inner gauges are the traits we predict. If an owner claims the page, their real photo can take its place.

PILOT_grlsLLJFP811

PILOT_grlsLLJFP811 is a Golden Retriever from the GRLS research cohort. One of 18,477 dogs in the atlas.

See PILOT_grlsLLJFP811 in the atlas
About PILOT_grlsLLJFP811

PILOT_grlsLLJFP811 sits well inside the Golden Retriever cluster - a fairly typical example.

  • Predicted large by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Wire-coat furnishings - the eyebrow + beard variant at RSPO2.
PILOT_grlsLLJFP811's nearest neighbors

The five dogs in the atlas whose genetic profiles sit closest to PILOT_grlsLLJFP811's. Click any of them to keep exploring.

  1. GRLS_grlsUCGVETQQ 34.09
  2. GRLS_grlsHTX9MBB 34.40
  3. GRLS_grlsJUPGL5BB 34.59
  4. GRLS_grls1G0BXJAA 34.65
  5. GRLS_grlsEWO92YII 34.72
PILOT_grlsLLJFP811's breed

PILOT_grlsLLJFP811 sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation.

  1. Golden Retriever 79%
  2. Labrador Retriever 21%
Source

From the Golden Retriever Lifetime Study . Breed-page reference: Golden Retriever.

Genotype at the 15 morphology loci

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/A
HMGA2 T/T
SMAD2 G/G
LCORL G/G
STC2 A/A
ADAMTS17 G/A
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 T/T
FGF5 T/C
KRT71 C/C
MC1R T/C
Ear set
MSRB3 A/A
Skull shape
BMP3 C/T
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 9.094
y 9.849
z 9.242
PCA-256 distance from breed centroid
31.47
Outlier percentile in breed
35
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which PILOT_grlsLLJFP811 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC97 z = 3.73
  • chr15:42,263,341 loading 0.0348
  • chr18:11,175,691 loading -0.0320
  • chr1:63,849,832 loading 0.0318
PC82 z = 2.95
  • chr1:68,097,128 loading 0.0396
  • chr1:69,785,342 loading -0.0385
  • chr1:70,040,058 loading 0.0383
PC79 z = -2.66
  • chr3:7,389,779 loading 0.0444
  • chr3:6,720,531 loading -0.0378
  • chr3:6,392,552 loading -0.0378
Ancestry reconstruction error: 0.56