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Genome medallion
About this medallion

This medallion is built from this dog's genome. The outer ring is its breed composition, a corrected ancestry decomposition, colored to match its star in the atlas. The inner gauges are the traits we predict. If an owner claims the page, their real photo can take its place.

PILOT_grlsQMD74QDD

PILOT_grlsQMD74QDD is a Golden Retriever from the GRLS research cohort. One of 18,477 dogs in the atlas.

See PILOT_grlsQMD74QDD in the atlas
About PILOT_grlsQMD74QDD

PILOT_grlsQMD74QDD is a strong genetic outlier within the Golden Retriever cluster - among the most distinctive examples of their breed.

  • Predicted medium by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Carrier of the RSPO2 wire-coat variant (single copy).
PILOT_grlsQMD74QDD's nearest neighbors

The five dogs in the atlas whose genetic profiles sit closest to PILOT_grlsQMD74QDD's. Click any of them to keep exploring.

  1. GRLS_grlsZIYIUUEE 21.16
  2. GRLS_grlsLQK0BOJJ 24.29
  3. GRLS_grlsM14NP0PP 25.09
  4. PILOT_grlsPFS0H300 26.11
  5. GRLS_grlsNI858BQQ 28.52
PILOT_grlsQMD74QDD's breed

PILOT_grlsQMD74QDD sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation.

  1. Golden Retriever 78%
  2. Labrador Retriever 22%
Source

From the Golden Retriever Lifetime Study . Breed-page reference: Golden Retriever.

Genotype at the 15 morphology loci

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 A/A
HMGA2 T/T
SMAD2 G/G
LCORL G/G
STC2 A/A
ADAMTS17 G/G
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 C/T
FGF5 T/C
KRT71 C/C
MC1R T/T
Ear set
MSRB3 A/A
Skull shape
BMP3 C/T
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 10.012
y 9.285
z 8.199
PCA-256 distance from breed centroid
47.56
Outlier percentile in breed
96
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which PILOT_grlsQMD74QDD scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC117 z = -4.12
  • chr1:102,829,549 loading 0.0371
  • chr8:40,351,665 loading 0.0356
  • chr1:70,953,125 loading 0.0339
PC108 z = 3.85
  • chr7:42,690,827 loading 0.0435
  • chr21:34,428,857 loading -0.0342
  • chr34:4,429,712 loading -0.0326
PC100 z = -3.73
  • chr20:38,870,936 loading 0.0397
  • chr34:1,972,619 loading -0.0360
  • chr34:1,533,247 loading -0.0331
Ancestry reconstruction error: 0.69