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Genome medallion
About this medallion

This medallion is built from this dog's genome. The outer ring is its breed composition, a corrected ancestry decomposition, colored to match its star in the atlas. The inner gauges are the traits we predict. If an owner claims the page, their real photo can take its place.

PILOT_grlsT1SJRZOO

PILOT_grlsT1SJRZOO is a Golden Retriever from the GRLS research cohort. One of 18,477 dogs in the atlas.

See PILOT_grlsT1SJRZOO in the atlas
About PILOT_grlsT1SJRZOO

PILOT_grlsT1SJRZOO sits near the center of the Golden Retriever cluster - genetically very typical for the breed.

  • Predicted large by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Carrier of the RSPO2 wire-coat variant (single copy).
PILOT_grlsT1SJRZOO's nearest neighbors

The five dogs in the atlas whose genetic profiles sit closest to PILOT_grlsT1SJRZOO's. Click any of them to keep exploring.

  1. Oldies_grlsaf837bd5 28.54
  2. GRLS_grlsK6PLE6YY 30.07
  3. GRLS_grls17J6WYY 30.20
  4. PFZ5E09_PFZ5E09 30.80
  5. GRLS_grlsAV6ERYEE 31.12
PILOT_grlsT1SJRZOO's breed

PILOT_grlsT1SJRZOO sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation.

  1. Golden Retriever 80%
  2. Labrador Retriever 20%
Source

From the Golden Retriever Lifetime Study . Breed-page reference: Golden Retriever.

Genotype at the 15 morphology loci

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/A
HMGA2 T/T
SMAD2 G/G
LCORL G/G
STC2 A/A
ADAMTS17 G/A
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 C/T
FGF5 C/C
KRT71 C/C
MC1R T/T
Ear set
MSRB3 A/A
Skull shape
BMP3 C/T
SMOC2 A/A
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 8.329
y 10.745
z 6.731
PCA-256 distance from breed centroid
29.06
Outlier percentile in breed
20
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which PILOT_grlsT1SJRZOO scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC214 z = 2.27
  • chr22:26,809,841 loading 0.0329
  • chr13:7,517,248 loading -0.0323
  • chr26:11,829,785 loading 0.0322
PC147 z = 2.27
  • chr20:14,856,460 loading 0.0316
  • chr10:6,497,921 loading 0.0302
  • chr10:6,396,863 loading 0.0301
PC212 z = 2.24
  • chr28:326,614 loading 0.0378
  • chr2:50,919,591 loading 0.0372
  • chr28:1,791,942 loading -0.0335
Ancestry reconstruction error: 0.53