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Genome medallion
About this medallion

This medallion is built from this dog's genome. The outer ring is its breed composition, a corrected ancestry decomposition, colored to match its star in the atlas. The inner gauges are the traits we predict. If an owner claims the page, their real photo can take its place.

PILOT_grlsZ941ZF66

PILOT_grlsZ941ZF66 is a Golden Retriever from the GRLS research cohort. One of 18,477 dogs in the atlas.

See PILOT_grlsZ941ZF66 in the atlas
About PILOT_grlsZ941ZF66

PILOT_grlsZ941ZF66 is a strong genetic outlier within the Golden Retriever cluster - among the most distinctive examples of their breed.

  • Predicted medium by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Carrier of the RSPO2 wire-coat variant (single copy).
PILOT_grlsZ941ZF66's nearest neighbors

The five dogs in the atlas whose genetic profiles sit closest to PILOT_grlsZ941ZF66's. Click any of them to keep exploring.

  1. GRLS_grlsWBV248AA 20.78
  2. GRLS_grlsJT6W5YY 21.01
  3. GRLS_grls29HWHH77 22.89
  4. GRLS_grlsIXNMCD33 22.99
  5. GRLS_grlsNCXK27MM 23.09
PILOT_grlsZ941ZF66's breed

PILOT_grlsZ941ZF66 sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation.

  1. Golden Retriever 74%
  2. Labrador Retriever 27%
Source

From the Golden Retriever Lifetime Study . Breed-page reference: Golden Retriever.

Genotype at the 15 morphology loci

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 A/A
HMGA2 T/T
SMAD2 G/G
LCORL G/G
STC2 A/A
ADAMTS17 G/G
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 C/T
FGF5 C/C
KRT71 C/C
MC1R T/C
Ear set
MSRB3 A/A
Skull shape
BMP3 C/T
SMOC2 A/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 4.234
y 10.414
z 7.952
PCA-256 distance from breed centroid
54.77
Outlier percentile in breed
100
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which PILOT_grlsZ941ZF66 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC43 z = 5.21
  • chr28:11,007,373 loading 0.0365
  • chr28:5,497,677 loading 0.0343
  • chr7:43,226,466 loading 0.0325
PC157 z = -5.01
  • chr10:7,000,030 loading 0.0335
  • chr10:4,826,260 loading -0.0333
  • chr23:15,561,811 loading -0.0321
PC168 z = 4.27
  • chr13:7,517,248 loading 0.0370
  • chr13:1,243,516 loading -0.0357
  • chr3:3,383,464 loading 0.0349
Ancestry reconstruction error: 0.79