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Genome medallion
About this medallion

This medallion is built from this dog's genome. The outer ring is its breed composition, a corrected ancestry decomposition, colored to match its star in the atlas. The inner gauges are the traits we predict. If an owner claims the page, their real photo can take its place.

PILOT_grlsZP8YMJXX

PILOT_grlsZP8YMJXX is a Golden Retriever from the GRLS research cohort. One of 18,477 dogs in the atlas.

See PILOT_grlsZP8YMJXX in the atlas
About PILOT_grlsZP8YMJXX

PILOT_grlsZP8YMJXX sits well inside the Golden Retriever cluster - a fairly typical example.

  • Predicted medium by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Wire-coat furnishings - the eyebrow + beard variant at RSPO2.
PILOT_grlsZP8YMJXX's nearest neighbors

The five dogs in the atlas whose genetic profiles sit closest to PILOT_grlsZP8YMJXX's. Click any of them to keep exploring.

  1. PFZ8C06_PFZ8C06 28.78
  2. PFZ26B01_PFZ26B01 29.23
  3. GRLS_grls3E6Q6J 29.34
  4. GRLS_grls4OOI0C66 29.80
  5. GRLS_grls3230EPZZ 29.99
PILOT_grlsZP8YMJXX's breed

PILOT_grlsZP8YMJXX sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation.

  1. Golden Retriever 76%
  2. Labrador Retriever 24%
Source

From the Golden Retriever Lifetime Study . Breed-page reference: Golden Retriever.

Genotype at the 15 morphology loci

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/A
HMGA2 C/C
SMAD2 G/G
LCORL G/G
STC2 A/A
ADAMTS17 G/A
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 T/T
FGF5 T/C
KRT71 C/C
MC1R T/C
Ear set
MSRB3 A/A
Skull shape
BMP3 T/T
SMOC2 A/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 5.648
y 10.772
z 7.736
PCA-256 distance from breed centroid
31.13
Outlier percentile in breed
33
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which PILOT_grlsZP8YMJXX scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC162 z = 2.24
  • chr6:16,267,511 loading 0.0413
  • chr6:16,208,125 loading 0.0394
  • chr6:17,304,623 loading -0.0387
PC204 z = -2.24
  • chr5:63,349,947 loading 0.0351
  • chr5:63,561,040 loading 0.0350
  • chr5:3,335,614 loading -0.0334
PC175 z = 2.24
  • chr4:78,342,208 loading 0.0332
  • chr20:38,715,188 loading 0.0330
  • chr20:38,805,558 loading 0.0328
Ancestry reconstruction error: 0.60