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Genome medallion
About this medallion

This medallion is built from this dog's genome. The outer ring is its breed composition, a corrected ancestry decomposition, colored to match its star in the atlas. The inner gauges are the traits we predict. If an owner claims the page, their real photo can take its place.

GRLS_grls5XCVFHTT

GRLS_grls5XCVFHTT is a Golden Retriever from the GRLS research cohort. One of 18,477 dogs in the atlas.

See GRLS_grls5XCVFHTT in the atlas
About GRLS_grls5XCVFHTT

GRLS_grls5XCVFHTT is a notable Golden Retriever - distinctive within the breed.

  • Predicted medium by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Carrier of the RSPO2 wire-coat variant (single copy).
GRLS_grls5XCVFHTT's nearest neighbors

The five dogs in the atlas whose genetic profiles sit closest to GRLS_grls5XCVFHTT's. Click any of them to keep exploring.

  1. GRLS_grlsTUZW86AA 23.32
  2. GRLS_grlsPEX66ROO 23.98
  3. GRLS_grlsLS9QDI55 24.68
  4. GRLS_grls9P70MX 34.13
  5. GRLS_grlsSAJ8O6TT 37.22
GRLS_grls5XCVFHTT's breed

GRLS_grls5XCVFHTT sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation.

  1. Golden Retriever 78%
  2. Labrador Retriever 23%
Source

From the Golden Retriever Lifetime Study . Breed-page reference: Golden Retriever.

Genotype at the 15 morphology loci

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/A
HMGA2 T/T
SMAD2 A/G
LCORL G/G
STC2 A/A
ADAMTS17 G/G
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 C/T
FGF5 T/C
KRT71 C/C
MC1R C/C
Ear set
MSRB3 A/A
Skull shape
BMP3 C/T
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 9.091
y 10.696
z 8.630
PCA-256 distance from breed centroid
40.97
Outlier percentile in breed
80
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which GRLS_grls5XCVFHTT scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC112 z = 3.52
  • chr3:6,565,383 loading 0.0418
  • chr18:10,714,022 loading 0.0387
  • chr3:6,720,531 loading 0.0365
PC223 z = 3.43
  • chr7:43,046,169 loading 0.0391
  • chr13:1,840,654 loading 0.0338
  • chr22:3,486,881 loading -0.0327
PC100 z = -3.17
  • chr20:38,870,936 loading 0.0397
  • chr34:1,972,619 loading -0.0360
  • chr34:1,533,247 loading -0.0331
Ancestry reconstruction error: 0.62