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Genome medallion
About this medallion

This medallion is built from this dog's genome. The outer ring is its breed composition, a corrected ancestry decomposition, colored to match its star in the atlas. The inner gauges are the traits we predict. If an owner claims the page, their real photo can take its place.

GRLS_grlsTUZW86AA

GRLS_grlsTUZW86AA is a Golden Retriever from the GRLS research cohort. One of 18,477 dogs in the atlas.

See GRLS_grlsTUZW86AA in the atlas
About GRLS_grlsTUZW86AA

GRLS_grlsTUZW86AA is a notable Golden Retriever - distinctive within the breed.

  • Predicted small by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Carrier of the RSPO2 wire-coat variant (single copy).
GRLS_grlsTUZW86AA's nearest neighbors

The five dogs in the atlas whose genetic profiles sit closest to GRLS_grlsTUZW86AA's. Click any of them to keep exploring.

  1. GRLS_grlsLS9QDI55 19.46
  2. GRLS_grls5XCVFHTT 23.32
  3. GRLS_grlsPEX66ROO 26.93
  4. GRLS_grls9P70MX 37.63
  5. GRLS_grlsJNBT5M66 38.37
GRLS_grlsTUZW86AA's breed

GRLS_grlsTUZW86AA sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation.

  1. Golden Retriever 79%
  2. Labrador Retriever 21%
Source

From the Golden Retriever Lifetime Study . Breed-page reference: Golden Retriever.

Genotype at the 15 morphology loci

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 A/A
HMGA2 T/T
SMAD2 A/G
LCORL G/G
STC2 A/A
ADAMTS17 G/G
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 C/T
FGF5 C/C
KRT71 C/C
MC1R T/C
Ear set
MSRB3 A/A
Skull shape
BMP3 C/C
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 9.109
y 10.702
z 8.662
PCA-256 distance from breed centroid
41.39
Outlier percentile in breed
82
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which GRLS_grlsTUZW86AA scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC112 z = 3.75
  • chr3:6,565,383 loading 0.0418
  • chr18:10,714,022 loading 0.0387
  • chr3:6,720,531 loading 0.0365
PC53 z = -3.27
  • chr1:72,254,803 loading 0.0346
  • chr1:70,825,780 loading 0.0344
  • chr14:9,177,180 loading 0.0335
PC77 z = 3.25
  • chr23:13,507,176 loading 0.0356
  • chr6:36,116,228 loading 0.0355
  • chr23:14,586,660 loading 0.0337
Ancestry reconstruction error: 0.64