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GRLS Hero · Founder
Genome medallion
About this medallion

This medallion is built from this dog's genome. The outer ring is its breed composition, a corrected ancestry decomposition, colored to match its star in the atlas. The inner gauges are the traits we predict. If an owner claims the page, their real photo can take its place.

GRLS_grlsMPD8RXKK

GRLS_grlsMPD8RXKK is a Golden Retriever from the GRLS research cohort. One of 18,477 dogs in the atlas.

See GRLS_grlsMPD8RXKK in the atlas
About GRLS_grlsMPD8RXKK

GRLS_grlsMPD8RXKK sits at the edge of the Golden Retriever cluster but still well within it.

  • Predicted medium by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Wire-coat furnishings - the eyebrow + beard variant at RSPO2.
GRLS_grlsMPD8RXKK's nearest neighbors

The five dogs in the atlas whose genetic profiles sit closest to GRLS_grlsMPD8RXKK's. Click any of them to keep exploring.

  1. Oldies_grls6a94812d 25.32
  2. GRLS_grlsXISA2YRR 29.39
  3. PFZ36H10_PFZ36H10 29.46
  4. PFZ41G08_PFZ41G08 29.99
  5. GRLS_grlsB1QL68DD 30.04
GRLS_grlsMPD8RXKK's breed

GRLS_grlsMPD8RXKK sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation.

  1. Golden Retriever 77%
  2. Labrador Retriever 23%
Source

From the Golden Retriever Lifetime Study . Breed-page reference: Golden Retriever.

Genotype at the 15 morphology loci

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 A/A
HMGA2 T/T
SMAD2 G/G
LCORL G/G
STC2 A/A
ADAMTS17 G/G
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 T/T
FGF5 T/C
KRT71 C/C
MC1R T/T
Ear set
MSRB3 A/A
Skull shape
BMP3 T/T
SMOC2 A/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 8.482
y 10.605
z 5.808
PCA-256 distance from breed centroid
38.22
Outlier percentile in breed
69
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which GRLS_grlsMPD8RXKK scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC173 z = -3.20
  • chr17:4,173,842 loading 0.0406
  • chr17:4,233,511 loading 0.0400
  • chr17:4,353,120 loading 0.0343
PC13 z = -3.05
  • chr11:38,528,765 loading 0.0255
  • chr18:48,123,615 loading 0.0255
  • chr15:30,849,502 loading 0.0253
PC168 z = 2.72
  • chr13:7,517,248 loading 0.0370
  • chr13:1,243,516 loading -0.0357
  • chr3:3,383,464 loading 0.0349
Ancestry reconstruction error: 0.65