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GRLS Hero Oldie · Founder
Genome medallion
About this medallion

This medallion is built from this dog's genome. The outer ring is its breed composition, a corrected ancestry decomposition, colored to match its star in the atlas. The inner gauges are the traits we predict. If an owner claims the page, their real photo can take its place.

Oldies_grls6a94812d

Oldies_grls6a94812d is a Golden Retriever from the GRLS research cohort. One of 18,477 dogs in the atlas.

See Oldies_grls6a94812d in the atlas
About Oldies_grls6a94812d

Oldies_grls6a94812d sits at the edge of the Golden Retriever cluster but still well within it.

  • Predicted medium by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Carrier of the RSPO2 wire-coat variant (single copy).
Oldies_grls6a94812d's nearest neighbors

The five dogs in the atlas whose genetic profiles sit closest to Oldies_grls6a94812d's. Click any of them to keep exploring.

  1. GRLS_grlsB1QL68DD 19.40
  2. GRLS_grlsMPD8RXKK 25.32
  3. PFZ36H10_PFZ36H10 25.60
  4. GRLS_grlsRZT87U00 26.29
  5. GRLS_grlsTTQ7Y3TT 28.21
Oldies_grls6a94812d's breed

Oldies_grls6a94812d sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation.

  1. Golden Retriever 78%
  2. Labrador Retriever 22%
Source

From the Golden Retriever Lifetime Study . Breed-page reference: Golden Retriever.

Genotype at the 15 morphology loci

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 A/A
HMGA2 T/T
SMAD2 G/G
LCORL G/G
STC2 A/A
ADAMTS17 G/G
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 C/T
FGF5 T/C
KRT71 C/C
MC1R T/C
Ear set
MSRB3 A/A
Skull shape
BMP3 C/T
SMOC2 A/A
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 8.505
y 10.533
z 5.831
PCA-256 distance from breed centroid
39.14
Outlier percentile in breed
72
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which Oldies_grls6a94812d scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC13 z = -3.25
  • chr11:38,528,765 loading 0.0255
  • chr18:48,123,615 loading 0.0255
  • chr15:30,849,502 loading 0.0253
PC234 z = -2.84
  • chr4:83,381,939 loading 0.0343
  • chr10:64,946,466 loading 0.0322
  • chr30:24,029,755 loading -0.0321
PC130 z = 2.83
  • chr6:33,386,202 loading 0.0387
  • chr6:30,876,588 loading 0.0376
  • chr6:30,769,727 loading -0.0372
Ancestry reconstruction error: 0.66