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Genome medallion
About this medallion

This medallion is built from this dog's genome. The outer ring is its breed composition, a corrected ancestry decomposition, colored to match its star in the atlas. The inner gauges are the traits we predict. If an owner claims the page, their real photo can take its place.

GRLS_grlsPQ4WE311

GRLS_grlsPQ4WE311 is a Golden Retriever from the GRLS research cohort. One of 18,477 dogs in the atlas.

See GRLS_grlsPQ4WE311 in the atlas
About GRLS_grlsPQ4WE311

GRLS_grlsPQ4WE311 is a notable Golden Retriever - distinctive within the breed.

  • Predicted large by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Smooth coat. No wire-furnishings variant at RSPO2.
GRLS_grlsPQ4WE311's nearest neighbors

The five dogs in the atlas whose genetic profiles sit closest to GRLS_grlsPQ4WE311's. Click any of them to keep exploring.

  1. Oldies_grls33b4d7d3 27.20
  2. PILOT_grlsRNPT4TKK 29.91
  3. GRLS_grls1B9PK7YY 35.38
  4. GRLS_grlsDOPYCBCC 36.11
  5. GRLS_grlsUC0R7HMM 36.69
GRLS_grlsPQ4WE311's breed

GRLS_grlsPQ4WE311 sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation.

  1. Golden Retriever 78%
  2. Labrador Retriever 22%
Source

From the Golden Retriever Lifetime Study . Breed-page reference: Golden Retriever.

Genotype at the 15 morphology loci

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/A
HMGA2 T/T
SMAD2 G/G
LCORL G/G
STC2 A/A
ADAMTS17 G/A
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 C/C
FGF5 C/C
KRT71 C/C
MC1R T/C
Ear set
MSRB3 A/A
Skull shape
BMP3 C/T
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 9.868
y 9.412
z 8.187
PCA-256 distance from breed centroid
39.86
Outlier percentile in breed
76
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which GRLS_grlsPQ4WE311 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC100 z = -3.49
  • chr20:38,870,936 loading 0.0397
  • chr34:1,972,619 loading -0.0360
  • chr34:1,533,247 loading -0.0331
PC117 z = -3.21
  • chr1:102,829,549 loading 0.0371
  • chr8:40,351,665 loading 0.0356
  • chr1:70,953,125 loading 0.0339
PC120 z = -3.10
  • chr3:1,222,422 loading 0.0435
  • chr34:3,128,578 loading 0.0397
  • chr34:1,919,265 loading -0.0396
Ancestry reconstruction error: 0.62