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CanVAS Shannon · Founder
Genome medallion
About this medallion

This medallion is built from this dog's genome. The outer ring is its breed composition, a corrected ancestry decomposition, colored to match its star in the atlas. The inner gauges are the traits we predict. If an owner claims the page, their real photo can take its place.

PFZ31G09_PFZ31G09

PFZ31G09_PFZ31G09 is a Golden Retriever from the Shannon research cohort. One of 18,477 dogs in the atlas.

See PFZ31G09_PFZ31G09 in the atlas
About PFZ31G09_PFZ31G09

PFZ31G09_PFZ31G09 sits at the edge of the Golden Retriever cluster but still well within it.

  • Predicted medium by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Carrier of the RSPO2 wire-coat variant (single copy).
PFZ31G09_PFZ31G09's nearest neighbors

The five dogs in the atlas whose genetic profiles sit closest to PFZ31G09_PFZ31G09's. Click any of them to keep exploring.

  1. PFZ31G10_PFZ31G10 27.43
  2. PFZ31D11_PFZ31D11 28.75
  3. PFZ31H09_PFZ31H09 31.69
  4. GRLS_grlsP4R4TKTT 35.37
  5. PFZ31C11_PFZ31C11 36.05
PFZ31G09_PFZ31G09's breed

PFZ31G09_PFZ31G09 sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation.

  1. Golden Retriever 80%
  2. Labrador Retriever 21%
Source

From the CanVAS (Shannon cohort) . Breed-page reference: Golden Retriever.

Genotype at the 15 morphology loci

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/A
HMGA2 T/T
SMAD2 A/G
LCORL G/G
STC2 A/A
ADAMTS17 G/G
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 C/T
FGF5 T/C
KRT71 C/C
MC1R T/T
Ear set
MSRB3 A/A
Skull shape
BMP3 C/T
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 8.903
y 10.576
z 9.198
PCA-256 distance from breed centroid
38.45
Outlier percentile in breed
70
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which PFZ31G09_PFZ31G09 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC53 z = -3.79
  • chr1:72,254,803 loading 0.0346
  • chr1:70,825,780 loading 0.0344
  • chr14:9,177,180 loading 0.0335
PC92 z = -3.27
  • chr25:1,819,027 loading 0.0402
  • chr25:3,195,036 loading -0.0397
  • chr25:2,138,835 loading 0.0370
PC220 z = 3.06
  • chr23:1,615,600 loading 0.0324
  • chr16:44,022,534 loading 0.0322
  • chr20:3,540,281 loading -0.0307
Ancestry reconstruction error: 0.61