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CanVAS Shannon · Founder
Genome medallion
About this medallion

This medallion is built from this dog's genome. The outer ring is its breed composition, a corrected ancestry decomposition, colored to match its star in the atlas. The inner gauges are the traits we predict. If an owner claims the page, their real photo can take its place.

PFZ35D02_PFZ35D02

PFZ35D02_PFZ35D02 is a Golden Retriever from the Shannon research cohort. One of 18,477 dogs in the atlas.

See PFZ35D02_PFZ35D02 in the atlas
About PFZ35D02_PFZ35D02

PFZ35D02_PFZ35D02 sits near the center of the Golden Retriever cluster - genetically very typical for the breed.

  • Predicted giant by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Wire-coat furnishings - the eyebrow + beard variant at RSPO2.
PFZ35D02_PFZ35D02's nearest neighbors

The five dogs in the atlas whose genetic profiles sit closest to PFZ35D02_PFZ35D02's. Click any of them to keep exploring.

  1. GRLS_grls494T1OXX 25.33
  2. PFZ7D03_PFZ7D03 26.82
  3. GRLS_grls0FZYUVOO 27.06
  4. Oldies_grls7c8523c3 27.14
  5. GRLS_grlsHXFOXYTT 27.23
PFZ35D02_PFZ35D02's breed

PFZ35D02_PFZ35D02 sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation.

  1. Golden Retriever 76%
  2. Labrador Retriever 24%
Source

From the CanVAS (Shannon cohort) . Breed-page reference: Golden Retriever.

Genotype at the 15 morphology loci

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/C
HMGA2 T/T
SMAD2 A/G
LCORL G/G
STC2 A/A
ADAMTS17 A/A
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 T/T
FGF5 T/T
KRT71 C/C
MC1R T/C
Ear set
MSRB3 A/A
Skull shape
BMP3 T/T
SMOC2 A/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 7.281
y 11.492
z 7.616
PCA-256 distance from breed centroid
26.93
Outlier percentile in breed
8
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which PFZ35D02_PFZ35D02 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC43 z = -3.04
  • chr28:11,007,373 loading 0.0365
  • chr28:5,497,677 loading 0.0343
  • chr7:43,226,466 loading 0.0325
PC205 z = 2.35
  • chr28:15,673,727 loading 0.0386
  • chr7:26,386,959 loading -0.0358
  • chr7:26,293,949 loading -0.0338
PC252 z = -2.10
  • chr19:30,132,204 loading 0.0320
  • chr25:21,796,415 loading -0.0316
  • chr3:5,565,848 loading 0.0303
Ancestry reconstruction error: 0.54