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CanVAS Hayward2016 · Founder
Genome medallion
About this medallion

This medallion is built from this dog's genome. The outer ring is its breed composition, a corrected ancestry decomposition, colored to match its star in the atlas. The inner gauges are the traits we predict. If an owner claims the page, their real photo can take its place.

PFZ7D03_PFZ7D03

PFZ7D03_PFZ7D03 is a Golden Retriever from the Hayward2016 research cohort. One of 18,477 dogs in the atlas.

See PFZ7D03_PFZ7D03 in the atlas
About PFZ7D03_PFZ7D03

PFZ7D03_PFZ7D03 sits near the center of the Golden Retriever cluster - genetically very typical for the breed.

  • Predicted large by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Carrier of the RSPO2 wire-coat variant (single copy).
PFZ7D03_PFZ7D03's nearest neighbors

The five dogs in the atlas whose genetic profiles sit closest to PFZ7D03_PFZ7D03's. Click any of them to keep exploring.

  1. GRLS_grls0449M0EE 26.08
  2. GRLS_grls1YYK24LL 26.57
  3. PFZ35D02_PFZ35D02 26.82
  4. GRLS_grlsQI3H2H77 26.90
  5. GRLS_grlsYI8VNVWW 27.14
PFZ7D03_PFZ7D03's breed

PFZ7D03_PFZ7D03 sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation.

  1. Golden Retriever 82%
  2. Labrador Retriever 18%
Source

From the CanVAS (Hayward2016 cohort) . Breed-page reference: Golden Retriever.

Genotype at the 15 morphology loci

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/C
HMGA2 T/T
SMAD2 A/G
LCORL G/G
STC2 A/A
ADAMTS17 G/A
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 C/T
FGF5 C/C
KRT71 C/C
MC1R T/T
Ear set
MSRB3 A/A
Skull shape
BMP3 C/C
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 7.116
y 11.109
z 7.543
PCA-256 distance from breed centroid
25.56
Outlier percentile in breed
3
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which PFZ7D03_PFZ7D03 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC43 z = -2.43
  • chr28:11,007,373 loading 0.0365
  • chr28:5,497,677 loading 0.0343
  • chr7:43,226,466 loading 0.0325
PC193 z = 2.18
  • chr19:1,162,032 loading 0.0555
  • chr19:1,420,658 loading 0.0489
  • chr19:1,685,081 loading -0.0433
PC151 z = 2.04
  • chr8:31,106,810 loading 0.0325
  • chr8:5,470,795 loading -0.0318
  • chr19:36,545,009 loading -0.0310
Ancestry reconstruction error: 0.52